Jonathan Lin, M.D., Ph.D.

Jonathan Lin, M.D., Ph.D.

  • Associate Professor
  • Ph.D. - Columbia University, New York
  • M.D. - Columbia University, New York
  • Residency Training:
    • Brigham Women's Hospital, Boston, MA
    • University of California, San Francisco
  • Board Certifications: Anatomic Pathology
  • Clinical Speciality: Ophthalmic Pathology

Research Interests

Protein misfolding occurs in numerous human diseases including cancer, Alzheimer’s Disease, neurodegeneration, diabetes, Cystic Fibrosis, viral infections, and blindness associated with retinitis pigmentosa due to expression of misfolded P23H rhodopsin in the eye.  Human cells respond to protein misfolding by activating a set of intracellular signaling pathways collectively termed the Unfolded Protein Response (UPR). UPR signaling promotes cell survival by reducing misfolded protein levels in the cell.  If protein misfolding persists, UPR signaling switches to promote cell death.  Our group studies the role of the UPR in the pathogenesis of these diseases that arise from protein misfolding.  We characterize which molecules of the UPR are activated at different stages of disease progression.  We develop genetic and chemical ways to artificially control the UPR in mammalian cells.  We test if artificial manipulation of the UPR can prevent these diseases.  We pursue these experiments in tissue culture or in transgenic animal models.

Our group also studies how the UPR signaling pathways determine whether to protect cells or promote cell death.  Protein misfolding initially triggers protective actions by the UPR.  But, if protein misfolding persists, the UPR switches to promoting cell death.  What is the molecular basis for this switch in UPR activity?  We examine transcriptional, translational, and post-translational mechanisms that could determine whether UPR signaling pathways are protective or proapoptotic.  We pursue these experiments using mammalian cell lines.

Click here for more information on the Lin Lab.

Representative Publications

  1. Lin JH, Li H, Yasumura D, Cohen HR, Zhang C, Panning B, Shokat KM, LaVail MM, Walter P. IRE1 signaling affects life/death cell fate during the unfolded protein response.   Science. 2007; 318: 944-949.
  2. Lin JH, Walter P, Yen, TSB. Endoplasmic reticulum stress in disease pathogenesis.  Ann Rev Pathol. 2008. 3: 399-425.
  3. Arber S, Ladel DR, Lin JH, Frank E, Jessell TM.  ETS gene Er81 controls the formation of functional connections between group Ia sensory afferents and motor neurons. Cell. 2000; 101: 485-498.
  4. Lin JH, Saito T, Anderson DJ, Lance-Jones C, Jessell TM, Arber S.  Functionally related motor neuron pool and muscle sensory afferent subtypes defined by coordinate expression ETS gene expression. Cell.  1998;  95: 393-407.
  5. Click here to search for Dr. Lin's publications


Jonathan Lin received his B.A. in biochemistry from Harvard University and his M.D. and Ph.D. degrees both from Columbia University, where he studied mammalian spinal cord development with Dr. Thomas M. Jessell.  Dr. Lin completed residency training in Anatomic Pathology at Brigham and Women’s Hospital and fellowship training in Ocular Pathology at UCSF, where he also worked with Dr. Peter Walter, to study the molecular mechanism of the mammalian unfolded protein response (UPR).  In addition, Dr. Lin has worked with Dr. Matthew LaVail at UCSF and demonstrated that UPR genes are activated in animal models of retinitis pigmentosa where a heritable mutation in rhodopsin leads to its misfolding and ultimately causes photoreceptor cell death and blindness.  Before coming to UCSD in 2008, Dr. Lin was an Instructor at UCSF in the departments of Pathology and Ophthalmology. Dr. Lin brings his research on the unfolded protein response in human diseases and clinical expertise in eye pathology to UCSD and the Department of Pathology.

Click here to contact me

Page 'Breadcrumb' Navigation:

External Resources: